- m -
- M
: dockinfo
- m
: molindex
, ensemble_tree_index
, assembly
, ensemble
, atom
, atype
, types
, ensindex
, residue
, meanvar
, linedef
, molecule
- mass
: assembly
, ensemble
- maxcyc
: sander_pmemd_cntrl
- maxKEmag
: vibmode
- maxmag
: vibmode
- maxmodemag
: vibmode
- mb
: atom
- mbi
: residue_node
- mbo
: residue_node
- MBONA
: amber_prmtop
- MBPER
: amber_prmtop
- mbs
: assembly
- MDCI
: sander_pmemd_MD_run_info
- mdcrd
: sander_pmemd_command_line
- mden
: sander_pmemd_command_line
- MDEN_EVERY
: AMBER_MD_DATA_REQUEST
- mdin
: sander_pmemd_command_line
- mdinfo
: sander_pmemd_command_line
- mdout
: sander_pmemd_command_line
- MDPER
: amber_prmtop
- mdvel
: sander_pmemd_command_line
- MGPER
: amber_prmtop
- mi
: ensemble_tree_index
, vibaddr
, assn_brief
, ringmotion
, moiety_selection
, molecule
- mn
: moiety_selection
- mN
: moiety_selection
- modemax
: vibmode
- moli
: atom
, residue
- MPHIA
: amber_prmtop
- MRmag
: vibmode
- MT
: parameter_set
- mT
: assembly
- MTHETA
: amber_prmtop
- mTi
: atom
, residue
- mvs
: vibmode