File List

Here is a list of all files with brief descriptions:

inc/declarations.h [code]
inc/general.h [code]	Deprecated header file containing structures used by various functions within the library
inc/geometries.h [code]
inc/gly_codeutils.h [code]	Header file that loads utilities to facilitate programming
inc/gly_fileutils.h [code]	Header file that loads utilities related to file I/O
inc/glylib.h [code]	A grand header file designed to simplify use of glylib by requiring that only one header file be loaded to get most of the glylib functionality
inc/load_pdb.h [code]	Header file for loading pdb files into structures
inc/modes.h [code]	Header file for vibrational modes
inc/molecules.h [code]	Header file for molecule structures
inc/mylib.h [code]	Generic header file that loads utilities often needed by programmers
inc/parameter_sets.h [code]	Structures for adding parameters to ensembles and assemblies
inc/PDB.h [code]
inc/stats.h [code]	Statistics utilities for glylib
inc/structures.h [code]	Very poorly named file containing structures pertinent to the loading of pdb files. Recommend name change
inc/AMBER/amber.h [code]
inc/AMBER/amber_coords.h [code]	Header file that loads utilities related to file I/O
inc/AMBER/amber_prmtop.h [code]
inc/AMBER/amber_prmtop_structs.h [code]
inc/AMBER/read_amber8_mden.h [code]
inc/AMBER/read_prep.h [code]
inc/AMBER/run_control.h [code]
legacy/bonding_utilities.c [code]
legacy/geometry.c [code]
legacy/geometry.h [code]
legacy/outputPDB.c [code]
legacy/rotations.c [code]
src/rotation.c [code]
src/AMBER/add_trajcrds_to_prmtop_assembly.c [code]
src/AMBER/amber_prmtop_init.c [code]
src/AMBER/crdsnaps.c [code]
src/AMBER/find_molecules.c [code]
src/AMBER/load_amber_prmtop.c [code]
src/AMBER/parse_amber_prmtop.c [code]
src/AMBER/read_amber8_mden.c [code]
src/AMBER/read_amber_prmtop.c [code]
src/AMBER/read_prep.c [code]
src/AMBER/write_amber_prmtop.c [code]
src/AUTODOCK/load_dlg_mol.c [code]
src/code_utilities/mytime.c [code]
src/code_utilities/myusage.c [code]
src/code_utilities/mywhine.c [code]
src/code_utilities/mywhineusage.c [code]
src/code_utilities/read_eek.c [code]
src/code_utilities/read_neek.c [code]
src/code_utilities/string_utilities.c [code]
src/debugging_utilities/dprint_X.c [code]
src/debugging_utilities/dXprint_X.c [code]
src/file_utilities/file_directory_status_utils.c [code]
src/file_utilities/fileslurp.c [code]
src/file_utilities/get_keysvals.c [code]
src/file_utilities/myfopen.c [code]
src/file_utilities/scan_file.c [code]
src/geometry_plain/add_coord.c [code]
src/geometry_plain/add_vec.c [code]
src/geometry_plain/coord_to_vec.c [code]
src/geometry_plain/coordinate_manipulations.c [code]
src/geometry_plain/get_angle_between_plane_and_vector.c [code]
src/geometry_plain/get_crossprod.c [code]
src/geometry_plain/get_distance_from_point_to_plane.c [code]
src/geometry_plain/get_dotprod.c [code]
src/geometry_plain/get_geometric_center.c [code]
src/geometry_plain/get_magnitude.c [code]
src/geometry_plain/get_plane.c [code]
src/geometry_plain/get_ring_pucker_plane.c [code]
src/geometry_plain/get_signed_distance_from_point_to_plane.c [code]
src/geometry_plain/normalize_vec.c [code]
src/geometry_plain/scalarmult_vec.c [code]
src/initialization/ATYPE_init.c [code]
src/initialization/initialize_GLYstruct.c [code]
src/initialization/load_atypes.c [code]
src/initialization/zero_stat.c [code]
src/initialization/zero_vec_crd.c [code]
src/memory_management/deallocate_amber_structures.c [code]
src/memory_management/deallocate_analysis_structures.c [code]
src/memory_management/deallocate_structures.c [code]
src/memory_management/deallocate_utility_structures.c [code]
src/PDB/get_type.c [code]
src/PDB/init_struct.c [code]
src/PDB/load_pdb.c [code]
src/PDB/pdb_def.c [code]
src/PDB/rwm_line.c [code]
src/PDB/writePDB.c [code]
src/selections/add_to_moiety_selection.c [code]
src/selections/atoms_to_coord_list.c [code]
src/selections/get_moiety_selection_assembly.c [code]
src/statistics/get_autocorr_est_array.c [code]
src/statistics/get_meanvar_array.c [code]
src/structural_calculations/assign_COM.c [code]
src/structural_calculations/find_vdw_clashes_pairwize_between_Assemblies.c [code]
src/structural_calculations/get_COM.c [code]
src/structural_calculations/get_dipole.c [code]
src/structural_calculations/get_rms_alt_X.c [code]
src/structural_calculations/normalize_X_vectors.c [code]
src/structural_calculations/rotate_vector_to_Z.c [code]
src/structural_calculations/set_COM.c [code]
src/structural_calculations/translate_by_XYZ.c [code]
src/structural_calculations/translate_unit.c [code]
src/structural_calculations/translate_zero_to_coord.c [code]
src/structural_calculations/vector_atom_movements.c [code]
src/structure_utilities/add_structure-X_to_structure-Y.c [code]
src/structure_utilities/bonding_utilities.c [code]
src/structure_utilities/identity_utilities.c [code]
src/structure_utilities/index_utilities.c [code]
src/structure_utilities/location_utilities.c [code]
working/AoutputPDB.c [code]
working/MoutputPDB.c [code]
working/outputPDB.c [code]
working/sslurp_directory_plus.c [code]