Classes
struct	gly_keysvals
struct	fileset
struct	fileslurp
	A structure for a function similar to the perl notion of "slurping" a file. More...
Functions
FILE *	myfopen (const char Name, const char option)
	Opens a file with error checking.
FILE *	myfreopen (const char Name, const char , FILE *option)
void	read_eek (const char surprise, const char FileDesc)
	Complains (EEK!!!) if a file read fails.
void	read_neek (const char *surprise, int line, int field)
	Complains (EEK!!!) if a file read fails.
void	read_fneek (const char surprise, int line, int field, const char FILENAME)
int	sscan_file (FILE F, const char str)
	Scans a file for instances of a string.
int	cscan_file (FILE *F, char c)
fileslurp	slurp_file (fileset F)
const char *	gly_get_current_working_directory (void)
gly_keysvals	get_keysvals_from_slurp (fileslurp F, const char *SEP, int newline_sep, int ignore_hash)
gly_keysvals	get_keysvals_from_file (fileset F, const char *SEP, int newline_sep, int ignore_hash)

Detailed Description

< Required for directory manipulations Required for directory manipulations Required to get the current working directory

Function Documentation

int cscan_file	(	FILE *	F,
		char	c
	)

Returns the number of times the character c is found in file F

Definition at line 25 of file scan_file.c.

gly_keysvals get_keysvals_from_file	(	fileset	F,
		const char *	SEP,
		int	newline_sep,
		int	ignore_hash
	)

This is like get_keysvals_from_slurp (see) except it uses a file and not a fileslurp.

In fact, this function merely slurps in your file and then calls get_keysvals_from_slurp

Reads in keyword/value pairs from a file, drops them in a structure designed for the purpose.

< Slurp file

< Call the slurp version...

Definition at line 75 of file get_keysvals.c.

References get_keysvals_from_slurp(), and slurp_file().

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gly_keysvals get_keysvals_from_slurp	(	fileslurp	F,
		const char *	SEP,
		int	newline_sep,
		int	ignore_hash
	)

Reads in keyword/value pairs from a file, drops them in a structure designed for the purpose.

Some notes:

If ignore_hash is 0, everything from a hash mark (#) to the end of the line is ignored.
Any line not containing the separator SEP is ignored.
Keywords and values may not be separated by a newline.
If newline_sep is set to zero, everything* from the start of the line to the first instance of SEP will be regarded as the KEYWORD and everything* from the first instance of SEP to the end of the line will be regarded as the VALUE. *Intial and final whitespace will be removed from both keyword and value, but all else, including internal whitespace, will be retained.
If newline_sep is not set to zero, neither keywords nor values may contain whitespace.
SEP should be passed as a string complete with a null terminator.

< counter

< temporary pointer

< Loop through the slurp

< See if there is a hash in this line

< If there is a hash, call that the end of the string

< If no separator this line, ignore it

< If newline_sep is set

< Split string at SEP (find with strstr)

< Set end of the keyword string

< Prune whitespace and copy to K

< Move pointer to the end of the separator

< Prune whitespace and copy to V

Else

Grab K
Check for SEP
Grab V --- Allow for line-crossing? No!!! (what a pain...)

Definition at line 28 of file get_keysvals.c.

References gly_keysvals::K, fileslurp::L, gly_keysvals::n, fileslurp::n, prune_string_whitespace(), and gly_keysvals::V.

Referenced by get_keysvals_from_file().

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const char* gly_get_current_working_directory ( void )

Determines the current working directory.

Returns a pointer to a string corresponding to the current working directory.

Typical usage:

char *myCWD;

myCWD=strdup(gly_get_current_working_directory());

Definition at line 53 of file file_directory_status_utils.c.

References mywhine().

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FILE* myfopen	(	const char *	Name,
		const char *	option
	)

Opens a file with error checking.

List of files and directories generated for each state. Opens a file with error checking. This function will open a file and then check to see if the file actually opened. If not, it will write a descriptive error message and exit(1) the program. Doing this saves many, many core dumps.

Definition at line 6 of file myfopen.c.

Referenced by crdsnaps(), load_atypes(), load_pdb(), outputAsmblPDB(), outputMolPDB(), read_amber_prmtop_asis(), slurp_file(), and write_amber_prmtop().

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