Tag Archives: Input Files

Which protein force fields are compatible with GLYCAM?

This is actually two different questions. Both will be addressed here. Question 1:  In a simulation, which protein force fields behave well with GLYCAM? The GLYCAM force fields are designed to be independent of other biomolecular force fields, and, therefore, to work at least reasonably well with any of them.  The philosophy is that if […]

Where did the AMBER Input Configurator go?

We stopped supporting the AMBER Input Configurator because the field of classical dynamics simulations is moving very rapidly, and we were finding it hard to keep up.  That is, the recommended set of inputs, and their inter-relationships, keeps changing, and might differ from one simulation engine to another (e.g., sander vs pmemd).  This is particularly true […]