BFMP is a method for naming conformations of six-member rings. It is similar to the IUPAC method (that, e.g., uses 1C4 for one of the chair conformations), but it is more flexible. It is able to unambiguously name symmetrical and asymmetrical shapes. It can also give information regarding the degree to which a shape deviates […]
Determining the ring conformation of Iduronic acid from a PDB file using BFMP. If needed, please click here for instructions on downloading and installing the BFMP program. The program requires two input files: a text file in PDB format and a configuration file. Click here to download BFMP-Tutorial2.tar.gz, the input and output files for this tutorial Using vi or […]
Determining the ring conformation of A-L-Idopyranose during the course of a 10ns MD simulation using BFMP. If needed, please click here for instructions on downloading and installing the BFMP program. The program requires three input files: an AMBER format topology file, AMBER format trajectory file and a configuration file. Click here to download BFMP-Tutorial1.tar.gz, the Input AMBER format files and output […]